The ASEAN University Network-Quality Assurance (AUN-QA) is a quality assurance framework established to promote and enhance higher education standards among ASEAN universities. It provides guidelines and assessment processes to ensure academic programs meet international quality benchmarks, fostering continuous improvement and regional comparability. The AUN-QA framework evaluates various aspects, including curriculum design, teaching and learning, student support, and facilities, to uphold excellence in education. In UP Mindanao, the following degree programs have been awarded AUN-QA certification:

• Bachelor of Science in Computer Science (2024-2029)
  
• Bachelor of Science in Biology (2024-2029)